本文整理了Java中org.opencb.commons.datastore.core.QueryParam类的一些代码示例，展示了QueryParam类的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。QueryParam类的具体详情如下：
包路径：org.opencb.commons.datastore.core.QueryParam
类名称：QueryParam

QueryParam介绍

暂无

代码示例

代码示例来源：origin: opencb/opencga

protected static void addParam(ObjectMap query, QueryParam key, Collection value) {
  if (CollectionUtils.isNotEmpty(value)) {
    query.put(key.key(), value);
  }
}

代码示例来源：origin: org.opencb.commons/commons-datastore-core

Objects.requireNonNull(enumType);
Map<String, E> enumFields = Arrays.asList(enumType.getEnumConstants()).stream().collect(
    Collectors.toMap(queryParam -> queryParam.key(), Function.<E>identity()));
for (Map.Entry<String, Object> entry : entrySet()) {
  if (!enumFields.containsKey(entry.getKey())) {
  } else {
    QueryParam queryParam = enumFields.get(entry.getKey());
    switch (queryParam.type()) {
      case TEXT:
        put(queryParam.key(), getString(queryParam.key()));
        break;
      case TEXT_ARRAY:
        put(queryParam.key(), getAsStringList(queryParam.key()));
        break;
      case INTEGER:
      case LONG:
        put(queryParam.key(), getLong(queryParam.key()));
        break;
      case INTEGER_ARRAY:
      case LONG_ARRAY:
        put(queryParam.key(), getAsLongList(queryParam.key()));
        break;
      case DECIMAL:
        put(queryParam.key(), getDouble(queryParam.key()));
        break;
      case DECIMAL_ARRAY:
        put(queryParam.key(), getAsDoubleList(queryParam.key()));
        break;

代码示例来源：origin: opencb/opencga

public static VariantQueryException malformedParam(QueryParam queryParam, String value) {
  return malformedParam(queryParam, value, "Expected: " + queryParam.description());
}

代码示例来源：origin: opencb/opencga

static List<Document> addCompQueryFilter(QueryParam option, String optionKey, String queryKey,
                     ObjectMap options, List<Document> andQuery) throws CatalogDBException {
  List<String> optionsList = options.getAsStringList(optionKey);
  if (queryKey == null) {
    queryKey = "";
  }
  return addCompQueryFilter(option.type(), queryKey, optionsList, andQuery);
}

代码示例来源：origin: opencb/opencga

protected static void addParam(ObjectMap query, QueryParam key, boolean value) {
  if (value) {
    query.put(key.key(), true);
  }
}

代码示例来源：origin: opencb/opencga

public static VariantQueryException unsupportedVariantQueryFilter(QueryParam param, String storageEngineId, String extra) {
  return new VariantQueryException("Unsupported variant query filter '" + param.key()
      + "' with storage engine '" + storageEngineId + "'."
      + (StringUtils.isEmpty(extra) ? "" : (' ' + extra)));
}

代码示例来源：origin: opencb/opencga

public static VariantQueryException missingParam(QueryParam queryParam, String message) {
  return new VariantQueryException("Missing param \"" + queryParam.key() + "\" . "
      +  message);
}

代码示例来源：origin: opencb/opencga

public static VariantQueryException malformedParam(QueryParam queryParam, String value, String message) {
  return new VariantQueryException("Malformed \"" + queryParam.key() + "\" query : \"" + value + "\". "
      +  message);
}

代码示例来源：origin: opencb/opencga

protected static void addParam(ObjectMap query, QueryParam key, String value) {
  query.putIfNotEmpty(key.key(), value);
}

代码示例来源：origin: opencb/opencga

public static Query getVariantQuery(Map<String, ?> queryOptions) {
  Query query = new Query();
  for (VariantQueryParam queryParams : VariantQueryParam.values()) {
    if (queryOptions.containsKey(queryParams.key())) {
      query.put(queryParams.key(), queryOptions.get(queryParams.key()));
    }
  }
  if (queryOptions.containsKey(VariantCatalogQueryUtils.SAMPLE_ANNOTATION.key())) {
    query.put(VariantCatalogQueryUtils.SAMPLE_ANNOTATION.key(), queryOptions.get(VariantCatalogQueryUtils.SAMPLE_ANNOTATION.key()));
  }
  if (queryOptions.containsKey(VariantCatalogQueryUtils.PROJECT.key())) {
    query.put(VariantCatalogQueryUtils.PROJECT.key(), queryOptions.get(VariantCatalogQueryUtils.PROJECT.key()));
  }
  if (queryOptions.containsKey(VariantCatalogQueryUtils.FAMILY.key())) {
    query.put(VariantCatalogQueryUtils.FAMILY.key(), queryOptions.get(VariantCatalogQueryUtils.FAMILY.key()));
  }
  if (queryOptions.containsKey(VariantCatalogQueryUtils.FAMILY_PHENOTYPE.key())) {
    query.put(VariantCatalogQueryUtils.FAMILY_PHENOTYPE.key(), queryOptions.get(VariantCatalogQueryUtils.FAMILY_PHENOTYPE.key()));
  }
  if (queryOptions.containsKey(VariantCatalogQueryUtils.MODE_OF_INHERITANCE.key())) {
    query.put(VariantCatalogQueryUtils.MODE_OF_INHERITANCE.key(),
        queryOptions.get(VariantCatalogQueryUtils.MODE_OF_INHERITANCE.key()));
  }
  if (queryOptions.containsKey(VariantCatalogQueryUtils.PANEL.key())) {
    query.put(VariantCatalogQueryUtils.PANEL.key(), queryOptions.get(VariantCatalogQueryUtils.PANEL.key()));
  }
  return query;
}

代码示例来源：origin: opencb/opencga

/**
 * Check if the object query contains the value param, is not null and, if is an string or a list, is not empty.
 * <p>
 * isValidParam(new Query(), PARAM) == false
 * isValidParam(new Query(PARAM.key(), null), PARAM) == false
 * isValidParam(new Query(PARAM.key(), ""), PARAM) == false
 * isValidParam(new Query(PARAM.key(), Collections.emptyList()), PARAM) == false
 * isValidParam(new Query(PARAM.key(), 5), PARAM) == true
 * isValidParam(new Query(PARAM.key(), "sdfas"), PARAM) == true
 *
 * @param query Query to parse
 * @param param QueryParam to check
 * @return If is valid or not
 */
public static boolean isValidParam(Query query, QueryParam param) {
  Object value = query == null ? null : query.getOrDefault(param.key(), null);
  return (value != null)
      && !(value instanceof String && ((String) value).isEmpty()
      || value instanceof Collection && ((Collection) value).isEmpty());
}

代码示例来源：origin: opencb/opencga

public static boolean isSupportedQueryParam(Query query, QueryParam param) {
  return isSupportedQuery(new Query(param.key(), query.get(param.key())));
}

代码示例来源：origin: opencb/opencga

protected VariantDBIterator getVariantsToIndex(boolean overwrite, Query query, QueryOptions queryOptions, VariantDBAdaptor dbAdaptor)
    throws StorageEngineException {
  if (!overwrite) {
    query.put(VariantQueryUtils.VARIANTS_TO_INDEX.key(), true);
  }
  return dbAdaptor.iterator(query, queryOptions);
}

代码示例来源：origin: opencb/opencga

@Override
  protected VariantDBIterator getVariantsToIndex(boolean overwrite, Query query, QueryOptions queryOptions, VariantDBAdaptor dbAdaptor)
      throws StorageEngineException {
    if (!overwrite) {
      query.put(VariantQueryUtils.VARIANTS_TO_INDEX.key(), true);
      logger.info("Column intersect!");
//        queryOptions.put("multiIteratorBatchSize", 1000);
      return (VariantDBIterator) getOrIteratorHBaseColumnIntersect(query, queryOptions, true);
    } else {
      logger.info("Get variants to index");
      return super.getVariantsToIndex(overwrite, query, queryOptions, dbAdaptor);
    }
  }

代码示例来源：origin: opencb/opencga

public static boolean isValidParam(Query query, QueryParam param, boolean discardNegated) {
  boolean validParam = isValidParam(query, param);
  if (!discardNegated || !validParam) {
    return validParam;
  } else {
    String strValue = query.getString(param.key());
    return splitValue(strValue, checkOperator(strValue))
        .stream()
        .anyMatch((v) -> !isNegated(v)); // Discard negated
  }
}

代码示例来源：origin: opencb/opencga

public static void convertGenesToRegionsQuery(Query query, CellBaseUtils cellBaseUtils) {
  VariantQueryXref variantQueryXref = VariantQueryUtils.parseXrefs(query);
  List<String> genes = variantQueryXref.getGenes();
  if (!genes.isEmpty()) {
    List<Region> regions = cellBaseUtils.getGeneRegion(genes);
    regions = mergeRegions(regions);
    query.put(ANNOT_GENE_REGIONS.key(), regions);
  }
}

代码示例来源：origin: opencb/opencga

private List<Region> getRegions(Query query) {
  List<Region> regions = new ArrayList<>();
  if (isValidParam(query, REGION)) {
    regions.addAll(Region.parseRegions(query.getString(REGION.key())));
  }
  if (isValidParam(query, ANNOT_GENE_REGIONS)) {
    regions.addAll(Region.parseRegions(query.getString(ANNOT_GENE_REGIONS.key())));
  }
  regions = mergeRegions(regions);
  return regions;
}

代码示例来源：origin: opencb/opencga

public QueryResult<ProjectMetadata.VariantAnnotationMetadata> getAnnotationMetadata(String name, String project, String sessionId)
    throws StorageEngineException, CatalogException, IOException {
  Query query = new Query(VariantCatalogQueryUtils.PROJECT.key(), project);
  return secure(query, empty(), sessionId, (engine) -> engine.getAnnotationMetadata(name));
}

代码示例来源：origin: opencb/opencga

public static void convertExpressionToGeneQuery(Query query, CellBaseUtils cellBaseUtils) {
    if (isValidParam(query, VariantQueryParam.ANNOT_EXPRESSION)) {
      String value = query.getString(VariantQueryParam.ANNOT_EXPRESSION.key());
      // Check if comma separated of semi colon separated (AND or OR)
      VariantQueryUtils.QueryOperation queryOperation = checkOperator(value);
      // Split by comma or semi colon
      List<String> expressionValues = splitValue(value, queryOperation);

      if (queryOperation == VariantQueryUtils.QueryOperation.AND) {
        throw VariantQueryException.malformedParam(VariantQueryParam.ANNOT_EXPRESSION, value, "Unimplemented AND operator");
      }
//            query.remove(VariantQueryParam.ANNOT_EXPRESSION.key());
      Set<String> genesByExpression = cellBaseUtils.getGenesByExpression(expressionValues);
      if (genesByExpression.isEmpty()) {
        genesByExpression = Collections.singleton(NONE);
      }
      query.put(ANNOT_EXPRESSION_GENES.key(), genesByExpression);
    }
  }

代码示例来源：origin: opencb/opencga

public static void convertGoToGeneQuery(Query query, CellBaseUtils cellBaseUtils) {
    if (isValidParam(query, VariantQueryParam.ANNOT_GO)) {
      String value = query.getString(VariantQueryParam.ANNOT_GO.key());
      // Check if comma separated of semi colon separated (AND or OR)
      VariantQueryUtils.QueryOperation queryOperation = checkOperator(value);
      // Split by comma or semi colon
      List<String> goValues = splitValue(value, queryOperation);

      if (queryOperation == VariantQueryUtils.QueryOperation.AND) {
        throw VariantQueryException.malformedParam(VariantQueryParam.ANNOT_GO, value, "Unimplemented AND operator");
      }
//            query.remove(VariantQueryParam.ANNOT_GO.key());
      Set<String> genesByGo = cellBaseUtils.getGenesByGo(goValues);
      if (genesByGo.isEmpty()) {
        genesByGo = Collections.singleton(NONE);
      }
      query.put(ANNOT_GO_GENES.key(), genesByGo);
    }
  }