本文整理了Java中ij.plugin.filter.Analyzer
类的一些代码示例,展示了Analyzer
类的具体用法。这些代码示例主要来源于Github
/Stackoverflow
/Maven
等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。Analyzer
类的具体详情如下:
包路径:ij.plugin.filter.Analyzer
类名称:Analyzer
[英]This plugin implements ImageJ's Analyze/Measure and Analyze/Set Measurements commands.
[中]该插件实现ImageJ的分析/测量和分析/设置测量命令。
代码示例来源:origin: net.imagej/ij
public String getTitle() {
if (title==null && this==Analyzer.getResultsTable())
title = "Results";
return title;
}
代码示例来源:origin: ca.mcgill/Sholl_Analysis
/**
* Retrieves precision according to {@code Analyze>Set Measurements...}
*
* @return the number of decimal digits to be used in tables
*/
protected int getScientificNotationAwarePrecision() {
final boolean sNotation = (Analyzer.getMeasurements() & Measurements.SCIENTIFIC_NOTATION) != 0;
int precision = Analyzer.getPrecision();
if (sNotation)
precision = -precision;
return precision;
}
代码示例来源:origin: net.imagej/ij
public int setup(String arg, ImagePlus imp) {
this.arg = arg;
this.imp = imp;
IJ.register(Analyzer.class);
if (arg.equals("set")) {
doSetDialog();
return DONE;
} else if (arg.equals("sum")) {
summarize();
return DONE;
} else if (arg.equals("clear")) {
if (IJ.macroRunning())
unsavedMeasurements = false;
resetCounter();
return DONE;
} else
return DOES_ALL+NO_CHANGES;
}
代码示例来源:origin: net.imagej/ij
public void run(ImageProcessor ip) {
measure();
Roi roi = imp.getRoi();
if (roi==null || roi.getType()!=Roi.POINT)
displayResults();
if ((measurements&ADD_TO_OVERLAY)!=0)
addRoiToOverlay();
}
代码示例来源:origin: sc.fiji/Stack_Manipulation
float[] values = new float[size];
Calibration cal = imp.getCalibration();
Analyzer analyzer = new Analyzer(imp);
int measurements = analyzer.getMeasurements();
boolean showResults = measurements!=0 && measurements!=LIMIT;
boolean showingLabels = (measurements&LABELS)!=0;
measurements |= MEAN;
if (showResults) {
if (!analyzer.resetCounter())
return null;
ip.setRoi(roi);
ImageStatistics stats = ImageStatistics.getStatistics(ip, measurements, cal);
analyzer.saveResults(stats, roi);
if (showResults)
analyzer.displayResults();
values[i-1] = (float)stats.mean;
代码示例来源:origin: net.imagej/ij
ip.snapshot();
ip.setProgressBar(null);
if (Analyzer.isRedirectImage()) {
redirectImp = Analyzer.getRedirectImage(imp);
if (redirectImp==null) return false;
int depth = redirectImp.getStackSize();
measurements = Analyzer.getMeasurements();
IJ.run("Clear Results");
((TextWindow)table).close();
rt = Analyzer.getResultsTable();
rt = Analyzer.getResultsTable();
analyzer = new Analyzer(imp, measurements, rt);
if (resetCounter && slice==1 && rt.size()>0) {
if (!Analyzer.resetCounter())
return false;
beginningCount = Analyzer.getCounter();
代码示例来源:origin: sc.fiji/Color_Histogram
public void printResults(){
ResultsTable rt = Analyzer.getResultsTable();
if (rt == null) {
rt = new ResultsTable();
Analyzer.setResultsTable(rt);
}
IJ.run("Clear Results", "");
String[] channels = {"red", "green", "blue"};
for (int i = 0; i < 3; i++) {
rt.incrementCounter();
rt.addValue("channel", channels[i]);
rt.addValue("mean", histMean[i]);
rt.addValue("mode", histModeCnt[i]);
rt.addValue("std.dev.", histStdev[i]);
}
rt.show("Results");
}
代码示例来源:origin: net.imagej/ij
private static ResultsTable multiMeasure(ImagePlus imp, Roi[] rois, boolean appendResults) {
int nSlices = imp.getStackSize();
Analyzer aSys = new Analyzer(imp); // System Analyzer
ResultsTable rtSys = Analyzer.getResultsTable();
ResultsTable rtMulti = new ResultsTable();
rtMulti.showRowNumbers(true);
imp.setSliceWithoutUpdate(sliceUse);
rtMulti.incrementCounter();
if ((Analyzer.getMeasurements()&Measurements.LABELS)!=0)
rtMulti.addLabel("Label", imp.getTitle());
int roiIndex = 0;
imp.setRoi(rois[i]);
roiIndex++;
aSys.measure();
for (int j=0; j<=rtSys.getLastColumn(); j++){
float[] col = rtSys.getColumn(j);
代码示例来源:origin: net.imagej/ij
windowTitle = "Results";
title = windowTitle;
if (!windowTitle.equals("Results") && this==Analyzer.getResultsTable())
IJ.log("ResultsTable.show(): the system ResultTable should only be displayed in the \"Results\" window.");
String tableHeadings = getColumnHeadings();
if (this!=Analyzer.getResultsTable())
Analyzer.setResultsTable(this);
if (size()>0)
Analyzer.setUnsavedMeasurements(true);
} else {
Frame frame = WindowManager.getFrame(windowTitle);
代码示例来源:origin: net.imagej/ij
private void init() {
int p = Analyzer.getPrecision();
if (p>precision)
precision = (short)p;
for (int i=0; i<decimalPlaces.length; i++)
decimalPlaces[i] = AUTO_FORMAT;
}
代码示例来源:origin: sc.fiji/Simple_Neurite_Tracer
public void addToResultsTable() {
final ResultsTable rt = Analyzer.getResultsTable();
if (!Analyzer.resetCounter())
return;
rt.incrementCounter();
rt.addValue("Filename", getOriginalFilename());
rt.addValue("All paths used", String.valueOf(useAllPaths));
rt.addValue("Paths used", numberOfPathsUsed);
rt.addValue("Sphere separation", sphereSeparation);
rt.addValue("Normalization", normalization);
rt.addValue("Axes", axes);
rt.addValue("Max inters. radius", getCriticalValue());
rt.addValue("Max inters.", getDendriteMaximum());
rt.addValue("Regression coefficient", getShollRegressionCoefficient());
rt.addValue("Regression gradient", getRegressionGradient());
rt.addValue("Regression intercept", getRegressionIntercept());
rt.show("Results");
}
代码示例来源:origin: net.imagej/ij
/** Converts a y-coordinate in pixels to physical units (e.g. mm),
taking into account the invertY and global "Invert Y Coordinates" flags. */
public double getY(double y, int imageHeight) {
if (invertY || (Analyzer.getMeasurements()&Measurements.INVERT_Y)!=0) {
if (yOrigin!=0.0)
return (yOrigin-y)*pixelHeight;
else
return (imageHeight-y-1)*pixelHeight;
} else
return (y-yOrigin)*pixelHeight;
}
代码示例来源:origin: net.imagej/ij
if (title!=null && title.equals("Results")) {
IJ.setTextPanel(null);
Analyzer.setUnsavedMeasurements(false);
Analyzer.setResultsTable(null);
Analyzer.resetCounter();
代码示例来源:origin: net.imagej/ij
String lastHdr = rt.getColumnHeading(ResultsTable.LAST_HEADING);
if (lastHdr==null || lastHdr.charAt(0)!='M') {
if (!reset()) return;
measurePoint(roi);
return;
measureLength(roi);
return;
measureAngle(roi);
return;
if (isRedirectImage()) {
stats = getRedirectStats(measurements, roi);
if (stats==null) return;
} else
stats = imp.getStatistics(measurements);
if (!IJ.isResultsWindow() && IJ.getInstance()!=null)
reset();
saveResults(stats, roi);
代码示例来源:origin: net.imagej/ij
void measurePoint(Roi roi) {
if (rt.size()>0) {
if (!IJ.isResultsWindow())
reset();
int index = rt.getColumnIndex("X");
if (index<0 || !rt.columnExists(index)) {
clearSummary();
rt.update(measurements, imp, roi);
ImagePlus imp2 = isRedirectImage()?getRedirectImageOrStack(imp):null;
if (imp2==null) imp2 = imp;
ImageStack stack = null;
saveResults(stats, point);
displayResults();
代码示例来源:origin: net.imagej/ij
if (indexes.length==0)
return false;
int measurements = Analyzer.getMeasurements();
if (appendResults && mmResults2!=null)
rt = mmResults2;
Analyzer analyzer = new Analyzer(imp, measurements2, rt);
analyzer.disableReset(true);
for (int slice=1; slice<=nSlices; slice++) {
if (nSlices>1) imp.setSliceWithoutUpdate(slice);
for (int i=0; i<indexes.length; i++) {
if (restoreWithoutUpdate(imp, indexes[i]))
analyzer.measure();
else
break;
代码示例来源:origin: net.imagej/ij
Analyzer.resetCounter();
ResultsTable rt = ResultsTable.getResultsTable();
for (int i=0; i<npoints; i++) {
rt.incrementCounter();
rt.setValue("Count", rt.size()-1, npoints);
int measurements = Analyzer.getMeasurements();
if ((measurements&Measurements.LABELS)!=0) {
String s = imp.getTitle();
代码示例来源:origin: net.imagej/ij
int getColumnCount(ImagePlus imp, int measurements) {
ImageStatistics stats = imp.getStatistics(measurements);
ResultsTable rt = new ResultsTable();
rt.showRowNumbers(true);
Analyzer analyzer = new Analyzer(imp, measurements, rt);
analyzer.saveResults(stats, null);
int count = 0;
for (int i=0; i<=rt.getLastColumn(); i++) {
float[] col = rt.getColumn(i);
String head = rt.getColumnHeading(i);
if (head!=null && col!=null)
count++;
}
return count;
}
代码示例来源:origin: net.imagej/ij
if (Analyzer.addToOverlay())
ResultsTable.selectRow(roi);
return Double.NaN;
ResultsTable rt = overlay.measure(imp);
if (IJ.getInstance()==null)
Analyzer.setResultsTable(rt);
else
rt.show("Results");
代码示例来源:origin: net.imagej/ij
boolean reset() {
boolean ok = true;
if (rt.size()>0 && !disableReset)
ok = resetCounter();
if (ok && rt.getColumnHeading(ResultsTable.LAST_HEADING)==null)
rt.setDefaultHeadings();
return ok;
}
内容来源于网络,如有侵权,请联系作者删除!