我在amazonec2示例上运行seqware虚拟机，我试图使用seqware查询引擎从vcf文件中查询数据。当我第一次启动示例并按照说明导入数据时，它工作正常，并继续工作，直到我停止示例。当我重新启动它的时候。它不允许我导入任何内容，也不允许我创建新的工作区。它总是返回下面的错误。我查看了这些进程，发现所有必需的节点都没有运行，所以我登录到root并转到 etc/init.d 目录并再次启动所有内容，此时，当我不尝试导入数据时，我甚至没有收到错误，我必须停止该过程。
[seqware@master target]$ java -classpath seqware-distribution-0.13.6.7-qe-full.jar com.github.seqware.queryengine.system.importers.SOFeatureImporter -i ../../seqware-queryengine/src/test/resources/com/github/seqware/queryengine/system/FeatureImporter/consequences_annotated.vcf ALL.chr3.phase1_release_v3.20101123.snps_indels_svs.genotypes.3_100001-101000.vcf -o keyValueVCF.out -r hg_19 -s c111aea5-5e18-4c62-a8a7-ec82fe151301 -a ad_hoc -w VCFVariantImportWorker
[SeqWare Query Engine] 0 [main] ERROR org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper - ZooKeeper exists failed after 3 retries
[SeqWare Query Engine] 1 [main] ERROR org.apache.hadoop.hbase.zookeeper.ZooKeeperWatcher - hconnection Received unexpected KeeperException, re-throwing exception
org.apache.zookeeper.KeeperException$ConnectionLossException: KeeperErrorCode = ConnectionLoss for /hbase/master
at org.apache.zookeeper.KeeperException.create(KeeperException.java:99)
at org.apache.zookeeper.KeeperException.create(KeeperException.java:51)
at org.apache.zookeeper.ZooKeeper.exists(ZooKeeper.java:1021)
at org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper.exists(RecoverableZooKeeper.java:154)
at org.apache.hadoop.hbase.zookeeper.ZKUtil.watchAndCheckExists(ZKUtil.java:226)
at org.apache.hadoop.hbase.zookeeper.ZooKeeperNodeTracker.start(ZooKeeperNodeTracker.java:82)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.setupZookeeperTrackers(HConnectionManager.java:580)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.<init>(HConnectionManager.java:569)
at org.apache.hadoop.hbase.client.HConnectionManager.getConnection(HConnectionManager.java:186)
at org.apache.hadoop.hbase.client.HBaseAdmin.<init>(HBaseAdmin.java:100)
at com.github.seqware.queryengine.impl.HBaseStorage.<init>(HBaseStorage.java:89)
at com.github.seqware.queryengine.factory.SWQEFactory$Storage_Type$3.buildStorage(SWQEFactory.java:109)
at com.github.seqware.queryengine.factory.SWQEFactory.getStorage(SWQEFactory.java:174)
at com.github.seqware.queryengine.factory.SWQEFactory.getQueryInterface(SWQEFactory.java:199)
at com.github.seqware.queryengine.impl.SimpleModelManager.<init>(SimpleModelManager.java:49)
at com.github.seqware.queryengine.impl.HBaseModelManager.<init>(HBaseModelManager.java:36)
at com.github.seqware.queryengine.impl.MRHBaseModelManager.<init>(MRHBaseModelManager.java:32)
at com.github.seqware.queryengine.factory.SWQEFactory.getModelManager(SWQEFactory.java:211)
at com.github.seqware.queryengine.system.importers.FeatureImporter.performImport(FeatureImporter.java:66)
at com.github.seqware.queryengine.system.importers.SOFeatureImporter.runMain(SOFeatureImporter.java:141)
at com.github.seqware.queryengine.system.importers.SOFeatureImporter.main(SOFeatureImporter.java:60)
[SeqWare Query Engine] 3 [main] FATAL org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation - Unexpected exception during initialization, aborting
org.apache.zookeeper.KeeperException$ConnectionLossException: KeeperErrorCode = ConnectionLoss for /hbase/master
at org.apache.zookeeper.KeeperException.create(KeeperException.java:99)
at org.apache.zookeeper.KeeperException.create(KeeperException.java:51)
at org.apache.zookeeper.ZooKeeper.exists(ZooKeeper.java:1021)
at org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper.exists(RecoverableZooKeeper.java:154)
at org.apache.hadoop.hbase.zookeeper.ZKUtil.watchAndCheckExists(ZKUtil.java:226)
at org.apache.hadoop.hbase.zookeeper.ZooKeeperNodeTracker.start(ZooKeeperNodeTracker.java:82)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.setupZookeeperTrackers(HConnectionManager.java:580)
at org.apache.hadoop.hbase.client.HConnectionManager$HConnectionImplementation.<init>(HConnectionManager.java:569)
at org.apache.hadoop.hbase.client.HConnectionManager.getConnection(HConnectionManager.java:186)
at org.apache.hadoop.hbase.client.HBaseAdmin.<init>(HBaseAdmin.java:100)
at com.github.seqware.queryengine.impl.HBaseStorage.<init>(HBaseStorage.java:89)
at com.github.seqware.queryengine.factory.SWQEFactory$Storage_Type$3.buildStorage(SWQEFactory.java:109)
at com.github.seqware.queryengine.factory.SWQEFactory.getStorage(SWQEFactory.java:174)
at com.github.seqware.queryengine.factory.SWQEFactory.getQueryInterface(SWQEFactory.java:199)
at com.github.seqware.queryengine.impl.SimpleModelManager.<init>(SimpleModelManager.java:49)
at com.github.seqware.queryengine.impl.HBaseModelManager.<init>(HBaseModelManager.java:36)
at com.github.seqware.queryengine.impl.MRHBaseModelManager.<init>(MRHBaseModelManager.java:32)
at com.github.seqware.queryengine.factory.SWQEFactory.getModelManager(SWQEFactory.java:211)
at com.github.seqware.queryengine.system.importers.FeatureImporter.performImport(FeatureImporter.java:66)
at com.github.seqware.queryengine.system.importers.SOFeatureImporter.runMain(SOFeatureImporter.java:141)
at com.github.seqware.queryengine.system.importers.SOFeatureImporter.main(SOFeatureImporter.java:60)
2条答案
按热度按时间gpnt7bae1#
我想出来了。apache服务是从cloudera包安装的。当示例被重新启动时，它们没有被重新启动，显然，仅仅从etc/init.d运行它们的脚本是不正确的方法。我在cloudera文档中找到了重新启动它们的命令。
izkcnapc2#
我也遇到了这个问题，我在启动zookeeper时提供了jute.maxbuffer参数，解决了这个问题。
更多信息请参考https://issues.apache.org/jira/browse/solr-4793