pandas 400使用panda to_gbq在Google BigQuery中创建表时阅读数据时出错

qxsslcnc  于 2023-01-19  发布在  Go
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我正在尝试从MySQL服务器查询数据,并使用panda.to_gbq API将其写入Google BigQuery。

def production_to_gbq(table_name_prod,prefix,table_name_gbq,dataset,project):
    # Extract data from Production

    q = """
        SELECT *
        FROM
            {}
        """.format(table_name_prod)

    df = pd.read_sql(q, con)

    # Write to gbq    
    df.to_gbq(dataset + table_name_gbq, project, chunksize=1000, verbose=True, reauth=False, if_exists='replace', private_key=None)

    return df

我一直收到400错误指示无效输入。

Load is 100.0% Complete
---------------------------------------------------------------------------
BadRequest                                Traceback (most recent call last)
/usr/local/lib/python3.6/site-packages/pandas_gbq/gbq.py in load_data(self, dataframe, dataset_id, table_id, chunksize, schema)
    569                     self.client, dataframe, dataset_id, table_id,
--> 570                     chunksize=chunksize):
    571                 self._print("\rLoad is {0}% Complete".format(

/usr/local/lib/python3.6/site-packages/pandas_gbq/_load.py in load_chunks(client, dataframe, dataset_id, table_id, chunksize, schema)
     73             destination_table,
---> 74             job_config=job_config).result()

/usr/local/lib/python3.6/site-packages/google/cloud/bigquery/job.py in result(self, timeout)
    527         # TODO: modify PollingFuture so it can pass a retry argument to done().
--> 528         return super(_AsyncJob, self).result(timeout=timeout)
    529 

/usr/local/lib/python3.6/site-packages/google/api_core/future/polling.py in result(self, timeout)
    110             # Pylint doesn't recognize that this is valid in this case.
--> 111             raise self._exception
    112 

BadRequest: 400 Error while reading data, error message: CSV table encountered too many errors, giving up. Rows: 10; errors: 1. Please look into the error stream for more details.

During handling of the above exception, another exception occurred:

GenericGBQException                       Traceback (most recent call last)
<ipython-input-73-ef9c7cec0104> in <module>()
----> 1 departments.to_gbq(dataset + table_name_gbq, project, chunksize=1000, verbose=True, reauth=False, if_exists='replace', private_key=None)
      2 

/usr/local/lib/python3.6/site-packages/pandas/core/frame.py in to_gbq(self, destination_table, project_id, chunksize, verbose, reauth, if_exists, private_key)
   1058         return gbq.to_gbq(self, destination_table, project_id=project_id,
   1059                           chunksize=chunksize, verbose=verbose, reauth=reauth,
-> 1060                           if_exists=if_exists, private_key=private_key)
   1061 
   1062     @classmethod

/usr/local/lib/python3.6/site-packages/pandas/io/gbq.py in to_gbq(dataframe, destination_table, project_id, chunksize, verbose, reauth, if_exists, private_key)
    107                       chunksize=chunksize,
    108                       verbose=verbose, reauth=reauth,
--> 109                       if_exists=if_exists, private_key=private_key)

/usr/local/lib/python3.6/site-packages/pandas_gbq/gbq.py in to_gbq(dataframe, destination_table, project_id, chunksize, verbose, reauth, if_exists, private_key, auth_local_webserver, table_schema)
    980     connector.load_data(
    981         dataframe, dataset_id, table_id, chunksize=chunksize,
--> 982         schema=table_schema)
    983 
    984 

/usr/local/lib/python3.6/site-packages/pandas_gbq/gbq.py in load_data(self, dataframe, dataset_id, table_id, chunksize, schema)
    572                     ((total_rows - remaining_rows) * 100) / total_rows))
    573         except self.http_error as ex:
--> 574             self.process_http_error(ex)
    575 
    576         self._print("\n")

/usr/local/lib/python3.6/site-packages/pandas_gbq/gbq.py in process_http_error(ex)
    453         # <https://cloud.google.com/bigquery/troubleshooting-errors>`__
    454 
--> 455         raise GenericGBQException("Reason: {0}".format(ex))
    456 
    457     def run_query(self, query, **kwargs):

GenericGBQException: Reason: 400 Error while reading data, error message: CSV table encountered too many errors, giving up. Rows: 10; errors: 1. Please look into the error stream for more details.

我研究了表模式,

id  INTEGER NULLABLE    
name    STRING  NULLABLE    
description STRING  NULLABLE    
created_at  INTEGER NULLABLE    
modified_at FLOAT   NULLABLE

它与 Dataframe 相同:

id                        int64
name                     object
description              object
created_at                int64
modified_at             float64

该表在GBQ中创建,但保持为空。
我在www.example.com _gbq API上读了一些东西,但没有找到太多pandas.to,除了这条似乎相关但没有回复的消息:
bigquery table is empty when using pandas to_gbq
我发现了一个关于对象数据类型中的数字的潜在解决方案,这些数字被传递到GBQ表中而不带引号,通过将列数据类型设置为字符串可以解决这个问题。
I use to_gbq on pandas for updating Google BigQuery and get GenericGBQException
我试过了:

for col in df.columns:
    if df[col].dtypes == object:
        df[col] = df[col].fillna('')
        df[col] = df[col].astype(str)

不幸的是,我仍然得到同样的错误。类似地,试图格式化丢失的数据并为int和float设置dtype也会给出同样的错误。
我是不是漏掉了什么?

puruo6ea

puruo6ea1#

发现bigquery无法正确处理**\r**(有时也是**\n**)有同样的问题,定位了问题,当用空格替换**\r**时,我真的很惊讶:

for col in list(df.columns):
    df[col] = df[col].apply(lambda x: x.replace(u'\r', u' ') if isinstance(x, str) or isinstance(x, unicode) else x)
s6fujrry

s6fujrry2#

当我在从云存储上的parquet文件导入bigquery时遇到类似的问题时,我已经在这里结束了好几次,然而,每次我都忘记了解决它的方法,所以我希望把我的发现留在这里不会太违反协议!
我意识到,我有一些列都是NULL,这看起来像是它们的数据类型是Pandas,但是如果使用pyarrow.parquet.read_schema(parquet_file),您将看到数据类型是null。
删除列后,上载将正常工作!

pftdvrlh

pftdvrlh3#

我在string列中有一些无效字符(pandas中的object)。我使用@Echochi方法,它工作正常

for col in list(parsed_data.select_dtypes(include='object').columns):
        parsed_data[col] = parsed_data[col].apply(lambda x:re.sub('[^A-Za-z0-9]+','', str(x)))

它对可接受的字符有一点限制,所以我使用了一种更通用的方法,因为biquery与UTF-8 bigquery文档兼容

for col in list(parsed_data.select_dtypes(include='object').columns):
        parsed_data[col] = parsed_data[col].apply(lambda x:re.sub(r"[^\u0900-\u097F]+",,'?', str(x)))

使用r"[^\u0900-\u097F]+",您将接受所有与UTF-8兼容的字符集

tzxcd3kk

tzxcd3kk4#

由于数据集中存在不需要的列“Unnamed 0”,我遇到了类似问题。我删除了该列,问题得到了解决。如果数据集中存在任何空列或不需要的列,请尝试查看形状和标题

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