我怎样才能解决这个错误,以可视化基因融合使用circlize包?

weylhg0b  于 2023-03-05  发布在  其他
关注(0)|答案(1)|浏览(167)

我想用R中的circlize包把几个基因融合可视化成一个圆圈。
我的数据是

fusion1 <- data.frame("chr" = c("chr7", "chr1", "chr12", "chr3", "chr16", "chr7", "chr12", "chr1"),
                   "start" = c(27934839, 92327028, 24366277, 64430159, 85391249, 27934839, 67462830, 741179),
                   "end" = c(28934839, 93327028, 25366277, 65430159, 86391249, 28934839, 68462830, 1741179))

fusion2 <- data.frame("chr" = c("chr17", "chr1",  "chr12", "chr3",  "chr16", "chr17", "chr12", "chr7"),
                     "start" = c(30267305, 92456741, 24048958, 64184643, 85667520, 30274636, 66990707, 55863785),
                     "end" = c(31267305,93456741, 25048958, 65184643, 86667520, 31274636, 67990707, 56863785))

我的密码是

library(circlize)
circos.initializeWithIdeogram()
circos.genomicLink(fusion1, fusion2, col = "red", border = NA)
circos.clear()

但我运行了代码,得到了一个错误:

Error in region1[i, 2] == region1[i, 3] : 
  comparison of these types is not implemented

这就是我所期望发生的

rqqzpn5f

rqqzpn5f1#

当我运行你的代码时,没有任何错误,请确保你有一个干净的环境,并确保你的列有如下相同的类型:

library(circlize)
circos.initializeWithIdeogram()
circos.genomicLink(fusion1, fusion2, col = "red", border = NA)

circos.clear()

创建于2023年3月4日,使用reprex v2.0.2

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