Dockerfile失败,numba安装时出现llvm-config错误

oxiaedzo  于 2023-03-29  发布在  Docker
关注(0)|答案(8)|浏览(266)

我的Dockerfile使用pypy基失败,出现FileNotFoundError:[Errno 2]没有这样的文件或目录:'llvm-config'安装llvmlite时,numba的依赖项列在我的requirements.txt中
我试着按照这里的说明进行更新Python numba / llvmlite on Debian 8 - i can't build llvmlite
我的错误更详细:

Building wheels for collected packages: llvmlite
Building wheel for llvmlite (setup.py): started
Building wheel for llvmlite (setup.py): finished with status 'error'
ERROR: Command errored out with exit status 1:
 command: /usr/local/bin/pypy3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-ux49fegr/llvmlite/setup.py'"'"'; __file__='"'"'/tmp/pip-install-ux49fegr/llvmlite/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8s6wwump --python-tag pp371
   cwd: /tmp/pip-install-ux49fegr/llvmlite/
Complete output (26 lines):
running bdist_wheel
/usr/local/bin/pypy3 /tmp/pip-install-ux49fegr/llvmlite/ffi/build.py
LLVM version... Traceback (most recent call last):
  File "/tmp/pip-install-ux49fegr/llvmlite/ffi/build.py", line 105, in main_posix
    out = subprocess.check_output([llvm_config, '--version'])
  File "/usr/local/lib-python/3/subprocess.py", line 336, in check_output
    **kwargs).stdout
  File "/usr/local/lib-python/3/subprocess.py", line 403, in run
    with Popen(*popenargs, **kwargs) as process:
  File "/usr/local/lib-python/3/subprocess.py", line 722, in __init__
    restore_signals, start_new_session)
  File "/usr/local/lib-python/3/subprocess.py", line 1354, in _execute_child
    raise child_exception_type(errno_num, err_msg)
FileNotFoundError: [Errno 2] No such file or directory: 'llvm-config'

我不想要conda安装的沉重负担。有没有办法在没有它的情况下实现pypy的numba安装?

FROM pypy:3.6-slim-stretch

RUN apt-get update && apt-get install -y gnupg wget software-properties-common
RUN wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | apt-key add - 15CF4D18AF4F7421
RUN apt-add-repository "deb http://apt.llvm.org/stretch/ llvm-toolchain-stretch-6.0 main"
RUN apt-get update
RUN apt-get -y install cython python-llvm build-essential libedit-dev
RUN apt-get -y install libllvm6.0 llvm-6.0-dev llvm-dev

RUN pip install enum34
ENV LLVM_CONFIG=/usr/lib/llvm-6.0-dev/bin/llvm-config pip install llvmlite
ENV LLVM_CONFIG=/usr/lib/llvm-6.0-dev/bin/llvm-config pip install numba
# ENV LD_LIBRARY_PATH /usr/lib/llvm-6.0-dev/lib/

#... other stuff

RUN apt-get clean && apt-get -y update
RUN apt-get -y install python3-dev \
    && apt-get -y install build-essential

# Add requirements
COPY requirements.txt /tmp/

# Install sphinx first as it does not work inside requirements
RUN pip install -U pip && pip install -U sphinx && pip install numpy && pip install cython &&  \
  pip install -r /tmp/requirements.txt

我期望在pypy上用numba干净地构建docker镜像

f3temu5u

f3temu5u1#

变通方法如果错误出现在4月17日之后(他们发布了新版本,请参阅历史记录)。作为变通方法,请尝试安装以前的版本

pip3 install llvmlite==0.31.0
vltsax25

vltsax252#

目前numba不会安装在python 3.9上。
我将我的基本docker镜像从python:3.9-slim更改为python:3.8-slim,然后pip install numba成功

7xllpg7q

7xllpg7q3#

它帮我修好了-

RUN echo "deb http://apt.llvm.org/xenial/ llvm-toolchain-xenial-8 main" >> /etc/apt/sources.list
RUN echo "deb-src http://apt.llvm.org/xenial/ llvm-toolchain-xenial-8 main" >> /etc/apt/sources.list

RUN apt-get install -y --no-install-recommends libedit-dev build-essential
RUN apt-get install -y --no-install-recommends  llvm-8 llvm-8-dev

RUN LLVM_CONFIG=/usr/bin/llvm-config-8 pip3 install enum34 llvmlite numba

使用版本8,因为在最新的llvm版本中得到了一个错误-

RuntimeError: Building llvmlite requires LLVM 7.0.x, 7.1.x or 8.0.x, got '3.7.1'

参考-https://apt.llvm.org/

au9on6nz

au9on6nz4#

“真实的”的解决方案是鼓励llvmlite和/或numba为pypy发布一个轮子。但是对于眼前的问题...
不知怎么的,你错过了一个llvm安装,至少根据apt-file

$ apt-file find llvm-config |grep llvm-6
llvm-6.0: /usr/bin/llvm-config-6.0
llvm-6.0: /usr/lib/llvm-6.0/bin/llvm-config
llvm-6.0: /usr/share/man/man1/llvm-config-6.0.1.gz
jv2fixgn

jv2fixgn5#

要在macOS上的Python 3.9上安装numba,请执行以下操作:

# install llvm using MacPorts
sudo port install llvm-10
sudo port install llvm_select
sudo port select --set llvm mp-llvm-10
# set environment variable used when building `llvmlite`
export LLVM_CONFIG=/opt/local/bin/llvm-config

# clone, build, and install `llvmlite`
# http://llvmlite.pydata.org/en/latest/admin-guide/install.html#compiling-llvmlite
git clone git@github.com:numba/llvmlite.git
cd llvmlite
python setup.py build
python runtests.py
python setup.py install
cd ..

# clone, build, and install `numba`
# https://numba.readthedocs.io/en/stable/user/installing.html#installing-from-source
git clone git@github.com:numba/numba.git
cd numba
export PATH=/usr/bin/:$PATH  # use clang, same as used for building Python 3.9
pip install -v .
cd ..

以上是与:

  • 提交334411cf638c8e06ba19bfda16b07dd64e9dac3c时的llvmlite,以及
  • numba at commit ca8132ba5e43fc3f79767046ed55217aeeabb35e.
x3naxklr

x3naxklr6#

根据https://askubuntu.com/questions/1286131/how-do-i-install-llvm-10-on-ubuntu-18-04我添加到Dockerfile的行

RUN apt-get -y install llvm-10*

RUN rm -f  /usr/bin/llvm-config

RUN ln -s /usr/bin/llvm-config-10 /usr/bin/llvm-config

它工作了(llvmlite已安装)

xkrw2x1b

xkrw2x1b7#

这是解决方案,从这个github issues thread获得,对我有用!本质上,pip只需要在安装库之前在Dockerfile中升级。我所需要做的就是在我的Dockerfile中添加这行:

--upgrade pip \

下面是我的Dockerfile示例:

# Docker commands here ...
RUN APT_INSTALL="apt-get install -y " && \
PIP_INSTALL="python3 -m pip install " && \
apt-get update && \
# more docker commands here ...
DEBIAN_FRONTEND=noninteractive $APT_INSTALL \
python3.6 \
python3.6-dev \
python3-distutils-extra \
python3-pip && \
ln -s /usr/bin/python3.6 /usr/local/bin/python3 && \
$PIP_INSTALL \
    --upgrade pip \ # adding this line was my solution
    setuptools \
    && \
$PIP_INSTALL \
    numpy==1.18.5 \
# more docker commands here...

这是针对python3.6的

t8e9dugd

t8e9dugd8#

我在使用python3.8时遇到了这个问题,但最终的解决方案只是将我的PIP更新到23.0.1版本,它解决了这个问题。

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