在R studio中安装包“ncdf4”失败

yftpprvb  于 2023-04-09  发布在  其他
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我正在尝试安装一个名为“ncdf 4”的R包。我已经尝试在R-studio界面的“packages”部分安装它,但也尝试在控制台中输入install.packages("ncdf4")
这是我在两个示例中得到的输出:

Installing package into ‘/home/user/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/ncdf4_1.17.tar.gz'
Content type 'application/x-gzip' length 124458 bytes (121 KB)
==================================================
downloaded 121 KB

* installing *source* package ‘ncdf4’ ...
** package ‘ncdf4’ successfully unpacked and MD5 sums checked
** using staged installation
configure.ac: starting
checking for nc-config... no
-----------------------------------------------------------------------------------
Error, nc-config not found or not executable.  This is a script that comes with the
netcdf library, version 4.1-beta2 or later, and must be present for configuration
to succeed.

If you installed the netcdf library (and nc-config) in a standard location, nc-config
should be found automatically.  Otherwise, you can specify the full path and name of
the nc-config script by passing the --with-nc-config=/full/path/nc-config argument
flag to the configure script.  For example:

./configure --with-nc-config=/sw/dist/netcdf4/bin/nc-config

Special note for R users:
-------------------------
To pass the configure flag to R, use something like this:

R CMD INSTALL --configure-args="--with-nc-config=/home/joe/bin/nc-config" ncdf4

where you should replace /home/joe/bin etc. with the location where you have
installed the nc-config script that came with the netcdf 4 distribution.
-----------------------------------------------------------------------------------
ERROR: configuration failed for package ‘ncdf4’
* removing ‘/home/user/R/x86_64-pc-linux-gnu-library/3.6/ncdf4’
Warning in install.packages :
  installation of package ‘ncdf4’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/RtmpXcbO2y/downloaded_packages’

有人能从我提供的代码中破译出错误吗?谢谢。

nszi6y05

nszi6y051#

我用的是Ubuntu 20.4,也遇到了同样的问题。
1.在航站楼

sudo apt-get update -y

第二步:在航站楼

sudo apt-get install -y libnetcdf-dev

步骤3:在RStudio中

install.packages("ncdf4")

在此之后,ncdf4安装成功。
参考:https://zoomadmin.com/HowToInstall/UbuntuPackage/libnetcdf-dev

rqqzpn5f

rqqzpn5f2#

我终于安装了ncdf4。
我在这里看到一个类似的问题:https://r.789695.n4.nabble.com/Problem-installing-ncdf-library-td4646986.html
我在linux终端中安装了所有的 libnetcdf 包,方法是输入:sudo apt install libnetcdf-*

bkkx9g8r

bkkx9g8r3#

如果您运行的是Ubuntu 18.04或其衍生版本,您可以通过执行以下操作来查找netcdf4.1库:

sudo apt-cache search libnetcdf

在我的会话(Linux Mint)中,我得到:

libnetcdf-c++4 - legacy NetCDF C++ interface
libnetcdf-c++4-1 - C++ interface for scientific data access to large binary data
libnetcdf-c++4-dbg - debugging symbols for NetCDF C++
libnetcdf-c++4-dev - creation, access, and sharing of scientific data in C++
libnetcdf-c++4-doc - NetCDF C++ API documentation
libnetcdf-cxx-legacy-dbg - debugging symbols for legacy NetCDF C++ interface
libnetcdf-cxx-legacy-dev - legacy NetCDF C++ interface - development files
libnetcdf-dev - creation, access, and sharing of scientific data
libnetcdf13 - Interface for scientific data access to large binary data
libnetcdff-dbg - debugging symbols for NetCDF Fortran
libnetcdff-dev - creation, access, and sharing of scientific data in Fortran
libnetcdff-doc - NetCDF Fortran documentation
libnetcdff6 - Fortran interface for scientific data access to large binary data

所以,安装libnetcdf-c++4-1应该可以解决您的问题:

sudo apt-get update
sudo apt-get install libnetcdf-c++4-1

回答你的问题了吗?

eblbsuwk

eblbsuwk4#

对于Arch Linux用户,您可能还没有安装netcdf。您可以使用pacman安装netcdf

sudo pacman -S netcdf
ux6nzvsh

ux6nzvsh5#

通过apt安装netcdf

apt-get install libnetcdf-dev

它为我工作(ubuntu20.04和R4)

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