numpy nanmean in numba

mspsb9vt  于 2023-11-18  发布在  其他
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我正在尝试为numba编写一个更简单的numpy.nanmean版本。下面是我的代码:

from numba import jit, prange
import numpy as np

@jit(nopython=True)
def nanmeanMY(a, axis=None):
    if a.ndim>1:
        ncols = a.shape[1]
        nrows = a.shape[0]
        a = a.T.flatten()
        res = np.zeros(ncols)
        for i in prange(ncols):
            col_no_nan = a[i*nrows:(i+1)*nrows]
            res[i] = np.mean(col_no_nan[~np.isnan(col_no_nan)])
        return res
    else:
        return np.mean(a[~np.isnan(a)])

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该代码应该检查你是在处理一个向量还是一个矩阵。,并给予列平均如果矩阵。使用测试矩阵

X = np.array([[1,2], [3,4]])
nanmeanMY(X)


我得到以下错误:

Traceback (most recent call last):

  Cell In[157], line 1
    nanmeanMY(a)

  File ~\anaconda3\Lib\site-packages\numba\core\dispatcher.py:468 in _compile_for_args
    error_rewrite(e, 'typing')

  File ~\anaconda3\Lib\site-packages\numba\core\dispatcher.py:409 in error_rewrite
    raise e.with_traceback(None)

TypingError: No implementation of function Function(<built-in function getitem>) found for signature:
 
getitem(array(int32, 2d, C), array(bool, 2d, C))
 
There are 22 candidate implementations:
      - Of which 20 did not match due to:
      Overload of function 'getitem': File: <numerous>: Line N/A.
        With argument(s): '(array(int32, 2d, C), array(bool, 2d, C))':
       No match.
      - Of which 2 did not match due to:
      Overload in function 'GetItemBuffer.generic': File: numba\core\typing\arraydecl.py: Line 209.
        With argument(s): '(array(int32, 2d, C), array(bool, 2d, C))':
       Rejected as the implementation raised a specific error:
         NumbaTypeError: Multi-dimensional indices are not supported.
  raised from C:\Users\*****\anaconda3\Lib\site-packages\numba\core\typing\arraydecl.py:89

During: typing of intrinsic-call at C:\Users\*****\AppData\Local\Temp\ipykernel_10432\1652358289.py (22)


这里有什么问题吗?

erhoui1w

erhoui1w1#

显然,由于您重用变量a,numba无法正确推断变量a的类型。
不要重复使用变量,而是创建一个新变量。

@jit(nopython=True)
def nanmeanMY(a):
    if a.ndim > 1:
        ncols = a.shape[1]
        nrows = a.shape[0]
        a_flatten = a.T.flatten()  # Renamed a to a_flatten.
        res = np.zeros(ncols)
        for i in prange(ncols):
            col_no_nan = a_flatten[i * nrows : (i + 1) * nrows]  # Use a_flatten.
            res[i] = np.mean(col_no_nan[~np.isnan(col_no_nan)])
        return res
    else:
        return np.mean(a[~np.isnan(a)])

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