Lightgbm/Streamlit with docker - OSError:libgomp.so.1:cannot open shared object file:No such file or directory

zfycwa2u  于 11个月前  发布在  Docker
关注(0)|答案(1)|浏览(172)

我正在使用streamlit和lightgbm与docker,我目前得到这个错误。

OSError: libgomp.so.1: cannot open shared object file: No such file or directory

Traceback (most recent call last):
  File "/usr/local/lib/python3.10/site-packages/streamlit/runtime/scriptrunner/script_runner.py", line 565, in _run_script
    exec(code, module.__dict__)
  File "/src/stream.py", line 6, in <module>
    model = pickle.load(open('model.pkl', 'rb'))
  File "/usr/local/lib/python3.10/site-packages/lightgbm/__init__.py", line 8, in <module>
    from .basic import Booster, Dataset, Sequence, register_logger
  File "/usr/local/lib/python3.10/site-packages/lightgbm/basic.py", line 110, in <module>
    _LIB = _load_lib()
  File "/usr/local/lib/python3.10/site-packages/lightgbm/basic.py", line 101, in _load_lib
    lib = ctypes.cdll.LoadLibrary(lib_path[0])
  File "/usr/local/lib/python3.10/ctypes/__init__.py", line 452, in LoadLibrary
    return self._dlltype(name)
  File "/usr/local/lib/python3.10/ctypes/__init__.py", line 374, in __init__
    self._handle = _dlopen(self._name, mode)

字符串
我试着更新我的Dockerfile以包含libgomp1以及此解决方案中列出的其他依赖项:https://stackoverflow.com/a/73140670/14651739
我的dockerfile

FROM ubuntu:latest
WORKDIR /src/
RUN apt-get update && apt-get install -y --no-install-recommends apt-utils

RUN apt-get update && \
    apt-get install -y --no-install-recommends \
        ca-certificates \
        cmake \
        build-essential \
        gcc \
        g++ \
        git && \
    rm -rf /var/lib/apt/lists/*

RUN apt-get update && apt-get -y install curl

RUN apt-get install libgomp1 -y
    # apt-get install curl 

FROM python:3.10.0-slim-buster

WORKDIR /src

COPY requirements.txt /src/

COPY --from=0 /src ./
RUN pip3 install -r requirements.txt

EXPOSE 8501

COPY . /src/
ENTRYPOINT ["streamlit", "run"]
CMD [ "stream.py" ]


我的requirements.txt文件

pandas
sklearn
streamlit
lightgbm

vq8itlhq

vq8itlhq1#

您正在使用多阶段构建,因此您需要在运行时阶段安装libgomp1。下面是修改后的Dockerfile,它在第二阶段再次安装libgomp1。

# build stage
FROM ubuntu:latest as builder
WORKDIR /src/

RUN apt-get update && apt-get install -y --no-install-recommends apt-utils \
    ca-certificates \
    cmake \
    build-essential \
    gcc \
    g++ \
    git \
    curl \
    libgomp1 && \
    rm -rf /var/lib/apt/lists/*

# runtime stage
FROM python:3.10-slim-buster

# install libgomp1 agagin
RUN apt-get update && apt-get install -y --no-install-recommends libgomp1 && rm -rf /var/lib/apt/lists/*

WORKDIR /src

COPY --from=builder /src/requirements.txt /src/
RUN pip3 install --no-cache-dir -r requirements.txt

EXPOSE 8501

COPY --from=builder /src /src/
ENTRYPOINT ["streamlit", "run"]
CMD ["stream.py"]

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还请注意lightgdm文档中的注解:
对于Linux用户,LightGBM <=3.3.3需要glibc >= 2.14,较新版本需要glibc >= 2.28。此外,在某些罕见情况下,当您点击OSError:libgomp.so.1:cannot open shared object file:No such file or directory error during importing LightGBM,您需要单独安装OpenMP runtime library(使用您的包管理器并搜索lib[g|(I)
所以我建议你正确地固定你的依赖关系。

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