本文整理了Java中org.opencb.commons.datastore.core.Query.put方法的一些代码示例，展示了Query.put的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Query.put方法的具体详情如下：
包路径：org.opencb.commons.datastore.core.Query
类名称：Query
方法名：put

Query.put介绍

暂无

代码示例

代码示例来源：origin: opencb/cellbase

default Query createQuery(GenericServiceModel.Request request) {
  Query query = new Query();
  request.getQueryMap().keySet().stream()
      .filter(key -> request.getQueryMap().get(key) != null)
      .forEach(key -> {
        query.put(key, request.getQueryMap().get(key));
      });
  return query;
}

代码示例来源：origin: opencb/opencga

protected Query createQuery(Request request) {
  Query query = new Query();
  for (String key : request.getQuery().keySet()) {
    if (request.getQuery().get(key) != null) {
      query.put(key, request.getQuery().get(key));
    }
  }
  return query;
}

代码示例来源：origin: opencb/opencga

public VariantQueryResult<Variant> intersect(Query query, QueryOptions queryOptions, List<String> studyIds, String sessionId)
    throws CatalogException, IOException, StorageEngineException {
  Query intersectQuery = new Query(query);
  intersectQuery.put(VariantQueryParam.STUDY.key(), String.join(VariantQueryUtils.AND, studyIds));
  return get(intersectQuery, queryOptions, sessionId);
}

代码示例来源：origin: opencb/opencga

private void fixQueryObject(Study study, Query query, String sessionId) throws CatalogException {
  // The individuals introduced could be either ids or names. As so, we should use the smart resolutor to do this.
  if (StringUtils.isNotEmpty(query.getString(SampleDBAdaptor.QueryParams.INDIVIDUAL.key()))) {
    MyResources<Individual> resource = catalogManager.getIndividualManager().getUids(
        query.getAsStringList(SampleDBAdaptor.QueryParams.INDIVIDUAL.key()), study.getFqn(), sessionId);
    query.put(SampleDBAdaptor.QueryParams.INDIVIDUAL_UID.key(), resource.getResourceList().stream().map(Individual::getUid)
        .collect(Collectors.toList()));
    query.remove(SampleDBAdaptor.QueryParams.INDIVIDUAL.key());
  }
}

代码示例来源：origin: opencb/opencga

@Override
public QueryResult<Long> restore(Query query, QueryOptions queryOptions) throws CatalogDBException {
  long startTime = startQuery();
  query.put(QueryParams.STATUS_NAME.key(), Status.DELETED);
  return endQuery("Restore projects", startTime, setStatus(query, Status.READY));
}

代码示例来源：origin: opencb/opencga

@Override
public QueryResult<Long> restore(Query query, QueryOptions queryOptions) throws CatalogDBException {
  long startTime = startQuery();
  query.put(QueryParams.STATUS_NAME.key(), Status.DELETED);
  return endQuery("Restore studies", startTime, setStatus(query, Status.READY));
}

代码示例来源：origin: opencb/opencga

private QueryResult<File> getParents(boolean rootFirst, QueryOptions options, String filePath, long studyId) throws CatalogException {
  List<String> paths = getParentPaths(filePath);
  Query query = new Query(FileDBAdaptor.QueryParams.PATH.key(), paths);
  query.put(FileDBAdaptor.QueryParams.STUDY_UID.key(), studyId);
  QueryResult<File> result = fileDBAdaptor.get(query, options);
  result.getResult().sort(rootFirst ? ROOT_FIRST_COMPARATOR : ROOT_LAST_COMPARATOR);
  return result;
}

代码示例来源：origin: opencb/opencga

@Test
public void parseAnnotCT1() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  // consequence types and genes
  // no xrefs or regions: genes AND cts
  query.put(ANNOT_CONSEQUENCE_TYPE.key(), "missense_variant,coding_sequence_variant");
  query.put(ANNOT_XREF.key(), "RIPK2,NCF4");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=geneToSoAcc:\"RIPK2_1583\"+OR+geneToSoAcc:\"RIPK2_1580\"+OR+geneToSoAcc:\"NCF4_1583\"+OR+geneToSoAcc:\"NCF4_1580\"", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parseAnnotCT4() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  // no consequence types: (xrefs OR regions) but we must add "OR genes", i.e.: xrefs OR regions OR genes
  // we must make an OR with xrefs, genes and regions and add it to the "AND" filter list
  query.put(REGION.key(), "1,2");
  query.put(ANNOT_XREF.key(), "RIPK2,NCF4");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=xrefs:\"RIPK2\"+OR+xrefs:\"NCF4\"+OR+(chromosome:\"1\")+OR+(chromosome:\"2\")", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parseAnnot() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  query.put(ANNOT_CONSEQUENCE_TYPE.key(), "missense_variant");
  query.put(ANNOT_XREF.key(), "RIPK2,NCF4");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=geneToSoAcc:\"RIPK2_1583\"+OR+geneToSoAcc:\"NCF4_1583\"", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Override
public DBIterator<Job> iterator(String studyStr, Query query, QueryOptions options, String sessionId) throws CatalogException {
  query = ParamUtils.defaultObject(query, Query::new);
  options = ParamUtils.defaultObject(options, QueryOptions::new);
  String userId = userManager.getUserId(sessionId);
  Study study = catalogManager.getStudyManager().resolveId(studyStr, userId);
  query.put(JobDBAdaptor.QueryParams.STUDY_UID.key(), study.getUid());
  fixQueryObject(study, query, sessionId);
  return jobDBAdaptor.iterator(query, options, userId);
}

代码示例来源：origin: opencb/opencga

@Test
public void parseConsequenceTypeSOAcc() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  query.put(ANNOT_CONSEQUENCE_TYPE.key(), "SO:0001792,SO:0001619");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=soAcc:\"1792\"+OR+soAcc:\"1619\"", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parsePopMafScoreMissing() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  // (* -popFreq__1kG_phase3__YRI:*) OR popFreq_1kG_phase3__YRI:[0.01 TO *]
  query.put(ANNOT_POPULATION_MINOR_ALLELE_FREQUENCY.key(), "1kG_phase3:YRI<<0.01");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=(popFreq__1kG_phase3__YRI:[0+TO+0.01}+OR+(*+-popFreq__1kG_phase3__YRI:*))", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parseNoPopMaf() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  query.put(ANNOT_POPULATION_MINOR_ALLELE_FREQUENCY.key(), "1kG_phase3:GWD!=0.061946902");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=-popFreq__1kG_phase3__GWD:0.061946902", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parseNoExactSift() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  query.put(ANNOT_PROTEIN_SUBSTITUTION.key(), "sift!=-0.3");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=-sift:\\-0.3", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parseHPOs() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  query.put(ANNOT_HPO.key(), "HP%3A000365,HP%3A0000007");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=(traits:\"HP%253A000365\"+OR+traits:\"HP%253A0000007\")", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parseConsequenceTypeSOTerm() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  query.put(ANNOT_CONSEQUENCE_TYPE.key(), "missense_variant");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=soAcc:\"1583\"", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parseExactSift() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  query.put(ANNOT_PROTEIN_SUBSTITUTION.key(), "sift==-0.3");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=sift:\\-0.3", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parseExactSift2() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  query.put(ANNOT_PROTEIN_SUBSTITUTION.key(), "sift=-0.3");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=sift:\\-0.3", solrQuery.toString());
}

代码示例来源：origin: opencb/opencga

@Test
public void parseRegionChromosomeStartEnd() {
  QueryOptions queryOptions = new QueryOptions();
  Query query = new Query();
  query.put(REGION.key(), "1:66381-76381,1:98766-117987");
  SolrQuery solrQuery = solrQueryParser.parse(query, queryOptions);
  display(query, queryOptions, solrQuery);
  assertEquals(flDefault1 + "&q=*:*&fq=(chromosome:\"1\"+AND+start:[66381+TO+*]+AND+end:[*+TO+76381])+OR+(chromosome:\"1\"+AND+start:[98766+TO+*]+AND+end:[*+TO+117987])", solrQuery.toString());
}