本文整理了Java中uk.ac.ebi.intact.model.Alias.setCvAliasType()
方法的一些代码示例,展示了Alias.setCvAliasType()
的具体用法。这些代码示例主要来源于Github
/Stackoverflow
/Maven
等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。Alias.setCvAliasType()
方法的具体详情如下:
包路径:uk.ac.ebi.intact.model.Alias
类名称:Alias
方法名:setCvAliasType
暂无
代码示例来源:origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psixml-converters
private static <A extends Alias> A newAliasInstance(Class<A> aliasClass, CvAliasType aliasType, String name) {
A alias = null;
try {
alias = aliasClass.newInstance();
alias.setCvAliasType(aliasType);
alias.setName(name);
} catch (Exception e) {
throw new PsiConversionException(e);
}
return alias;
}
}
代码示例来源:origin: uk.ac.ebi.intact.dataexchange/intact-cvutils
@Override
public void visitAlias( Alias alias ) {
final CvAliasType type = alias.getCvAliasType();
if( type != null ) {
final String mi = type.getIdentifier();
if ( mi != null ) {
final String key = createCvKey( type.getClass(), mi );
final CvAliasType oboTerm = ( CvAliasType ) mi2cv.get( key );
if ( oboTerm == null ) {
log.warn( "Could not find alias " + type.getClass().getSimpleName() + "( " + type.getShortLabel() + " ) by MI: " + mi );
} else {
alias.setCvAliasType( oboTerm );
}
}
}
}
代码示例来源:origin: uk.ac.ebi.intact.core/intact-core-readonly
/**
* Create a new Alias for the given Annotated object
*
* @param annotatedObject the object to which we'll add a new Alias
* @param cvAliasType the CvAliasType (may be null)
* @param name the name of the alias (namy be null)
*
* @see uk.ac.ebi.intact.model.CvAliasType
* @see uk.ac.ebi.intact.model.AnnotatedObject
*/
public Alias( AnnotatedObject annotatedObject, CvAliasType cvAliasType, String name ) {
super();
setParentAc( annotatedObject.getAc() );
setCvAliasType( cvAliasType );
setName( name );
}
代码示例来源:origin: uk.ac.ebi.intact.core/intact-core
protected Alias cloneAlias(Alias alias) throws IntactClonerException {
if (alias == null) return null;
Class clazz = CgLibUtil.removeCglibEnhanced(alias.getClass());
Alias clone = null;
try {
final Constructor constructor = clazz.getConstructor();
clone = (Alias) constructor.newInstance();
clonerManager.addClone(alias, clone);
clone.setCvAliasType(clone(alias.getCvAliasType()));
clone.setName(alias.getName());
} catch (Exception e) {
throw new IntactClonerException("An error occured upon building a " + clazz.getSimpleName(), e);
}
return clone;
}
代码示例来源:origin: uk.ac.ebi.intact.core/intact-core-readonly
protected Alias cloneAlias(Alias alias) throws IntactClonerException {
if (alias == null) return null;
Class clazz = CgLibUtil.removeCglibEnhanced(alias.getClass());
Alias clone = null;
try {
final Constructor constructor = clazz.getConstructor();
clone = (Alias) constructor.newInstance();
clonerManager.addClone(alias, clone);
clone.setCvAliasType(clone(alias.getCvAliasType()));
clone.setName(alias.getName());
} catch (Exception e) {
throw new IntactClonerException("An error occured upon building a " + clazz.getSimpleName(), e);
}
return clone;
}
代码示例来源:origin: uk.ac.ebi.intact.core/intact-core
public static <A extends Alias> A createAlias(AnnotatedObject<?, A> parent, String name, CvAliasType aliasType) {
A alias = (A) newAliasInstanceFor(parent.getClass());
alias.setOwner(parent.getOwner());
alias.setParent(parent);
alias.setCvAliasType(aliasType);
alias.setName(name);
return alias;
}
代码示例来源:origin: uk.ac.ebi.intact.core/intact-core-readonly
public static <A extends Alias> A createAlias(AnnotatedObject<?, A> parent, String name, CvAliasType aliasType) {
A alias = (A) newAliasInstanceFor(parent.getClass());
alias.setOwner(parent.getOwner());
alias.setParent(parent);
alias.setCvAliasType(aliasType);
alias.setName(name);
return alias;
}
代码示例来源:origin: uk.ac.ebi.intact/intact-core
public static <A extends Alias> A createAlias(AnnotatedObject<?,A> parent, String name, CvAliasType aliasType) {
A alias = (A) newAliasInstanceFor(parent.getClass());
alias.setOwner(parent.getOwner());
alias.setParent(parent);
alias.setCvAliasType(aliasType);
alias.setName(name);
return alias;
}
代码示例来源:origin: uk.ac.ebi.intact.core/intact-core
/**
* Create a new Alias for the given Annotated object
*
* @param annotatedObject the object to which we'll add a new Alias
* @param cvAliasType the CvAliasType (may be null)
* @param name the name of the alias (namy be null)
*
* @see uk.ac.ebi.intact.model.CvAliasType
* @see uk.ac.ebi.intact.model.AnnotatedObject
*/
public Alias( AnnotatedObject annotatedObject, CvAliasType cvAliasType, String name ) {
super();
setParentAc( annotatedObject.getAc() );
setCvAliasType( cvAliasType );
setName( name );
}
代码示例来源:origin: uk.ac.ebi.intact/intact-core
/**
* Create a new Alias for the given Annotated object
*
* @param anOwner The institution owning this Alias
* @param annotatedObject the object to which we'll add a new Alias
* @param cvAliasType the CvAliasType (may be null)
* @param name the name of the alias (namy be null)
*
* @see uk.ac.ebi.intact.model.CvAliasType
* @see uk.ac.ebi.intact.model.AnnotatedObject
*/
public Alias( Institution anOwner, AnnotatedObject annotatedObject, CvAliasType cvAliasType, String name ) {
setOwner( anOwner );
setParentAc( annotatedObject.getAc() );
setCvAliasType( cvAliasType );
setName( name );
}
代码示例来源:origin: uk.ac.ebi.intact.core/intact-core
private Alias synchronizeAlias( Alias alias, AnnotatedObject parent ) {
if (alias.getAc() != null) {
return IntactContext.getCurrentInstance().getDataContext().getDaoFactory()
.getAliasDao().getByAc(alias.getAc());
}
alias.setCvAliasType( synchronize( alias.getCvAliasType() ) );
alias.setParent(parent);
if (alias.getAc() == null && parent.getAc() != null) {
annotatedObjectsToPersist.put(keyBuilder.keyForAlias(alias), alias);
}
return alias;
}
代码示例来源:origin: uk.ac.ebi.intact.core/intact-core-readonly
private Alias synchronizeAlias( Alias alias, AnnotatedObject parent ) {
if (alias.getAc() != null) {
return IntactContext.getCurrentInstance().getDataContext().getDaoFactory()
.getAliasDao().getByAc(alias.getAc());
}
alias.setCvAliasType( synchronize( alias.getCvAliasType() ) );
alias.setParent(parent);
if (alias.getAc() == null && parent.getAc() != null) {
annotatedObjectsToPersist.put(keyBuilder.keyForAlias(alias), alias);
}
return alias;
}
代码示例来源:origin: uk.ac.ebi.intact.core/intact-persister
alias.setCvAliasType(cvAliasType);
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