htsjdk.samtools.util.Histogram.getMin()方法的使用及代码示例

x33g5p2x  于2022-01-20 转载在 其他  
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本文整理了Java中htsjdk.samtools.util.Histogram.getMin()方法的一些代码示例,展示了Histogram.getMin()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。Histogram.getMin()方法的具体详情如下:
包路径:htsjdk.samtools.util.Histogram
类名称:Histogram
方法名:getMin

Histogram.getMin介绍

[英]Returns the key with the lowest count.
[中]返回具有最低计数的键。

代码示例

代码示例来源:origin: samtools/htsjdk

@Test(expectedExceptions = UnsupportedOperationException.class)
public void testGetMinBlowup() {
  final String[] is = {"foo", "bar", "bar"};
  final Histogram<String> histo = new Histogram<>();
  for (final String i : is) histo.increment(i);
  histo.getMin();//blow up
}

代码示例来源:origin: samtools/htsjdk

@Test
public void testGetMinMax() {
  final int[] is = {4,4,5,5,5,6,6,6,6};
  final Histogram<Integer> histo = new Histogram<>();
  for (final int i : is) histo.increment(i);
  Assert.assertEquals(histo.getMin(), 4.0);
  Assert.assertEquals(histo.getMax(), 6.0);
}

代码示例来源:origin: broadinstitute/picard

metrics.READ_PAIRS = (long) total;
metrics.MAX_INSERT_SIZE = (int) histogram.getMax();
metrics.MIN_INSERT_SIZE = (int) histogram.getMin();
metrics.MEDIAN_INSERT_SIZE = histogram.getMedian();
metrics.MODE_INSERT_SIZE = histogram.getMode();
double high = median;
while (low >= histogram.getMin()-1 || high <= histogram.getMax()+1) {
  final Histogram.Bin<Integer> lowBin = histogram.get((int) low);
  if (lowBin != null) covered += lowBin.getValue();

代码示例来源:origin: com.github.broadinstitute/picard

metrics.READ_PAIRS = (long) total;
metrics.MAX_INSERT_SIZE = (int) histogram.getMax();
metrics.MIN_INSERT_SIZE = (int) histogram.getMin();
metrics.MEDIAN_INSERT_SIZE = histogram.getMedian();
metrics.MODE_INSERT_SIZE = histogram.getMode();
double high = median;
while (low >= histogram.getMin()-1 || high <= histogram.getMax()+1) {
  final Histogram.Bin<Integer> lowBin = histogram.get((int) low);
  if (lowBin != null) covered += lowBin.getValue();

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