uk.ac.ebi.intact.model.Interaction.getComponents()方法的使用及代码示例

x33g5p2x  于2022-01-21 转载在 其他  
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本文整理了Java中uk.ac.ebi.intact.model.Interaction.getComponents()方法的一些代码示例，展示了Interaction.getComponents()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Interaction.getComponents()方法的具体详情如下：
包路径：uk.ac.ebi.intact.model.Interaction
类名称：Interaction
方法名：getComponents

Interaction.getComponents介绍

暂无

代码示例

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psimitab-converters

protected boolean isExpandableBasic(Interaction interaction) {
  if (interaction.getComponents().isEmpty()) {
    return false;
  }
  return true;
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psimitab-converters

public boolean isExpandable(Interaction interaction) {
    if ( interaction.getComponents().size() > 2 || interaction.getComponents().size() == 0 ) {
      return false;
    }
    return true;
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

/**
 * Collect a distinct set of Interactor associated to the given Interaction.
 *
 * @param interaction the interaction
 * @return a non null Set of Interactor.
 */
public static Set<Interactor> selectDistinctInteractors(Interaction interaction) {
  Set<Interactor> interactors = new HashSet<Interactor>(interaction.getComponents().size());
  for (Component component : interaction.getComponents()) {
    interactors.add(component.getInteractor());
  }
  return interactors;
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

/**
 * Collect a distinct set of Interactor associated to the given Interaction.
 *
 * @param interaction the interaction
 * @return a non null Set of Interactor.
 */
public static Set<Interactor> selectDistinctInteractors( Interaction interaction ) {
  Set<Interactor> interactors = new HashSet<Interactor>( interaction.getComponents().size() );
  for ( Component component : interaction.getComponents() ) {
    interactors.add( component.getInteractor() );
  }
  return interactors;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

/**
 * Collect a distinct set of Interactor associated to the given Interaction.
 *
 * @param interaction the interaction
 * @return a non null Set of Interactor.
 */
public static Set<Interactor> selectDistinctInteractors(Interaction interaction) {
  Set<Interactor> interactors = new HashSet<Interactor>(interaction.getComponents().size());
  for (Component component : interaction.getComponents()) {
    interactors.add(component.getInteractor());
  }
  return interactors;
}

代码示例来源：origin: uk.ac.ebi.intact.sanity/intact-sanity-rules

public Collection<GeneralMessage> check(Interaction interaction) throws SanityRuleException {
    Collection<GeneralMessage> messages = new ArrayList<GeneralMessage>();
    Collection<Component> components = interaction.getComponents();
    if(components.size() == 0){
      messages.add(new GeneralMessage(MessageDefinition.INTERACTION_WITHOUT_COMPONENT, interaction));
    }
    return messages;
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public Component createComponentRandom() {
  return createInteractionRandomBinary().getComponents().iterator().next();
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

public Component createComponentRandom() {
  return createInteractionRandomBinary().getComponents().iterator().next();
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public Component createComponentRandom() {
  return createInteractionRandomBinary().getComponents().iterator().next();
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

/**
 * Checks if an interaction contain other interactor types than Protein
 *
 * @param interaction
 * @return
 */
public static boolean containsNonProteinInteractors( Interaction interaction ) {
  for ( Component component : interaction.getComponents() ) {
    Interactor interactor = component.getInteractor();
    if ( !( interactor instanceof ProteinImpl ) ) {
      return true;
    }
  }
  return false;
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

public Feature createFeature(String shortLabel, CvFeatureType featureType) {
  Interaction interaction = createInteractionRandomBinary();
  Component component = interaction.getComponents().iterator().next();
  Feature feature = new Feature(getInstitution(), shortLabel, component, featureType);
  return feature;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public Feature createFeature(String shortLabel, CvFeatureType featureType) {
  Interaction interaction = createInteractionRandomBinary();
  Component component = interaction.getComponents().iterator().next();
  Feature feature = new Feature(getInstitution(), shortLabel, component, featureType);
  return feature;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public Feature createFeature(String shortLabel, CvFeatureType featureType) {
  Interaction interaction = createInteractionRandomBinary();
  Component component = interaction.getComponents().iterator().next();
  Feature feature = new Feature(getInstitution(), shortLabel, component, featureType);
  return feature;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-persister

protected void saveOrUpdateComponents(Interaction intactObject) throws PersisterException {
  for (Component component : intactObject.getComponents()) {
    ComponentPersister.getInstance().saveOrUpdate(component);
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-persister

protected void syncComponents(Interaction intactObject)  {
    ComponentPersister compPersister = ComponentPersister.getInstance();

    List<Component> components = new ArrayList<Component>(intactObject.getComponents().size());

    for (Component component : intactObject.getComponents()) {
      Component c = compPersister.syncIfTransient(component);
      c.setInteraction(intactObject);
      c.setInteractor( component.getInteractor() );
      components.add(c);
    }

//        for (Component c : components) {
//            c.setInteraction(intactObject);
//        }

    intactObject.setComponents(components);
  }

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

protected Key keyForInteraction(Interaction interaction) {
  final Key key = new Key(new CrcCalculator().crc64(interaction));
  // pre-calculate the keys for the components here and put them in a map
  int n = 0;
  for (Component component : interaction.getComponents()) {
    Key compKey = new Key(key.getUniqueString() + ":" + component.getShortLabel() + "[" + n + "]");
    keyCache.put(Component.class.getSimpleName() + ":" + System.identityHashCode(component), compKey);
    n++;
  }
  return key;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

protected Key keyForInteraction(Interaction interaction) {
  final Key key = new Key(new CrcCalculator().crc64(interaction));
  // pre-calculate the keys for the components here and put them in a map
  int n = 0;
  for (Component component : interaction.getComponents()) {
    Key compKey = new Key(key.getUniqueString() + ":" + component.getShortLabel() + "[" + n + "]");
    keyCache.put(Component.class.getSimpleName() + ":" + System.identityHashCode(component), compKey);
    n++;
  }
  return key;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

protected void copyInteraction( Interaction source, Interaction target ) {
  copyProperty(source, "KD", target);
  copyProperty(source, "crc", target);
  copyProperty(source, "cvInteractionType", target);
  copyCollection( source.getComponents(), target.getComponents() );
  copyCollection( source.getExperiments(), target.getExperiments() );
  copyCollection( source.getConfidences(), target.getConfidences() );
  
  copyCollection( source.getParameters(), target.getParameters() );
  copyInteractorCommons( source, target );
  // we have ommited CRC on purpose
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

protected void copyInteraction( Interaction source, Interaction target ) {
  copyProperty(source, "KD", target);
  copyProperty(source, "crc", target);
  copyProperty(source, "cvInteractionType", target);
  copyCollection( source.getComponents(), target.getComponents() );
  copyCollection( source.getExperiments(), target.getExperiments() );
  copyCollection( source.getConfidences(), target.getConfidences() );
  
  copyCollection( source.getParameters(), target.getParameters() );
  copyInteractorCommons( source, target );
  // we have ommited CRC on purpose
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

protected void traverseInteraction(Interaction interaction, IntactVisitor ... visitors) {
  if (interaction == null) return;
  for (IntactVisitor visitor : visitors) {
    visitor.visitInteraction(interaction);
  }
  // check if this element has been traversed already, to avoid cyclic recursion
  if (recursionChecker.isAlreadyTraversed(interaction)) {
    return;
  }
  traverse(interaction.getCvInteractionType(), visitors);
  traverse(interaction.getExperiments(), visitors);
  traverse(interaction.getComponents(), visitors);
  traverse(interaction.getConfidences(), visitors);
  traverse(interaction.getParameters(), visitors);
}

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