本文整理了Java中uk.ac.ebi.intact.model.Interaction.getXrefs()方法的一些代码示例，展示了Interaction.getXrefs()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Interaction.getXrefs()方法的具体详情如下：
包路径：uk.ac.ebi.intact.model.Interaction
类名称：Interaction
方法名：getXrefs

Interaction.getXrefs介绍

暂无

代码示例

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

/**
 * Retreives Imex identifier stored in the Xrefs.
 *
 * @param interaction the interaction to search on.
 * @return an imex id or null if not found.
 */
public static String getImexIdentifier(Interaction interaction) {
  if (interaction == null) {
    throw new IllegalArgumentException("You must give a non null interaction");
  }
  for (InteractorXref xref : interaction.getXrefs()) {
    if (CvDatabase.IMEX_MI_REF.equals(xref.getCvDatabase().getIdentifier())) {
      return xref.getPrimaryId();
    }
  }
  // Could not find an IMEx id
  return null;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

/**
 * Retreives Imex identifier stored in the Xrefs.
 *
 * @param interaction the interaction to search on.
 * @return an imex id or null if not found.
 */
public static String getImexIdentifier(Interaction interaction) {
  if (interaction == null) {
    throw new IllegalArgumentException("You must give a non null interaction");
  }
  for (InteractorXref xref : interaction.getXrefs()) {
    if (CvDatabase.IMEX_MI_REF.equals(xref.getCvDatabase().getIdentifier())) {
      return xref.getPrimaryId();
    }
  }
  // Could not find an IMEx id
  return null;
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

/**
 * Retreives Imex identifier stored in the Xrefs.
 *
 * @param interaction the interaction to search on.
 * @return an imex id or null if not found.
 */
public static String getImexIdentifier( Interaction interaction ) {
  if ( interaction == null ) {
    throw new IllegalArgumentException( "You must give a non null interaction" );
  }
  for ( InteractorXref xref : interaction.getXrefs() ) {
    CvObjectXref idCvDatabase = CvObjectUtils.getPsiMiIdentityXref( xref.getCvDatabase() );
    if ( idCvDatabase.getPrimaryId().equals( CvDatabase.IMEX_MI_REF ) ) {
      return xref.getPrimaryId();
    }
  }
  // Could not find an IMEx id
  return null;
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

for ( Iterator iterator = interaction.getXrefs().iterator(); iterator.hasNext(); ) {
  Xref xref = (Xref) iterator.next();

代码示例来源：origin: uk.ac.ebi.intact.app/data-conversion

for ( Iterator iterator = interaction.getXrefs().iterator(); iterator.hasNext(); ) {
  Xref xref = (Xref) iterator.next();

代码示例来源：origin: uk.ac.ebi.intact.util/data-conversion

for ( Iterator iterator = interaction.getXrefs().iterator(); iterator.hasNext(); ) {
  Xref xref = (Xref) iterator.next();

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-solr-core

/****************************/
// enrich fields in the SolrDocument passed as parameter
public void enrich (
    Interaction interaction,
    SolrInputDocument solrDocument )
    throws Exception {
  // check parameters and information
  if ( interaction == null ) { return ; }
  // Enrich interaction type
  enrichInteractionType(interaction.getCvInteractionType(), solrDocument) ;
  // Enrich Complex Organism fields
  enrichOrganism(interaction, solrDocument) ;
  // Enrich Complex Xref fields
  enrichInteractionXref(interaction.getXrefs(), solrDocument) ;
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psixml-converters

protected Xref getImexXref(Interaction interaction) {
  Collection<? extends Xref> refs;
  if (isCheckInitializedCollections()){
    refs = IntactCore.ensureInitializedXrefs(interaction);
  }
  else {
    refs = interaction.getXrefs();
  }
  for (Xref xref : refs) {
    if (CvDatabase.IMEX_MI_REF.equals(xref.getCvDatabase().getIdentifier())
        && xref.getCvXrefQualifier() != null
        && CvXrefQualifier.IMEX_PRIMARY_MI_REF.equals(xref.getCvXrefQualifier().getIdentifier())) {
      return xref;
    }
  }
  return null;
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psixml-converters

protected void fixSourceReferenceXrefsIfNecessary(Interaction interaction) {
  InteractorXref xrefToFix = null;
  if( ConverterContext.getInstance().isAutoFixInteractionSourceReference() ) {
    // Look up source reference xref and only try to fix identity if there is no source ref present.
    // if the qualifier is identity, we will check if the owner identity MI is the same as the database MI
    for (InteractorXref xref : interaction.getXrefs()) {
      if (xref.getCvXrefQualifier() != null &&
          getInstitutionPrimaryId() != null &&
          getInstitutionPrimaryId().equals( xref.getPrimaryId() ) &&
          !CvXrefQualifier.SOURCE_REFERENCE_MI_REF.equals(xref.getCvXrefQualifier().getIdentifier())) {
        xrefToFix = xref;
        break;
      }
    }
    if ( xrefToFix != null ) {
      log.warn("Interaction identity xref found pointing to the source database. It should be of type 'source-reference'. Will be fixed automatically: "+xrefToFix);
      CvXrefQualifier sourceReference = CvObjectUtils.createCvObject(interaction.getOwner(), CvXrefQualifier.class, CvXrefQualifier.SOURCE_REFERENCE_MI_REF, CvXrefQualifier.SOURCE_REFERENCE);
      xrefToFix.setCvXrefQualifier(sourceReference);
      addMessageToContext(MessageLevel.WARN, "Interaction identity xref found pointing to the source database. It should be of type 'source-reference'. Fixed.", true);
    }
  }
}

代码示例来源：origin: uk.ac.ebi.intact/intact-ebi-search-engine-export

boolean hasXrefs = !interaction.getXrefs().isEmpty();
boolean hasLinks = !interaction.getComponents().isEmpty();
    for ( Xref xref : interaction.getXrefs() ) {
      String db = xref.getCvDatabase().getShortLabel();
      String id = xref.getPrimaryId();

代码示例来源：origin: uk.ac.ebi.intact.app/data-conversion

for ( Iterator iterator = interaction.getXrefs().iterator(); iterator.hasNext() && imexId == null; ) {
  Xref xref = (Xref) iterator.next();

代码示例来源：origin: uk.ac.ebi.intact.util/data-conversion

for ( Iterator iterator = interaction.getXrefs().iterator(); iterator.hasNext() && imexId == null; ) {
  Xref xref = (Xref) iterator.next();

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

for ( Iterator iterator = interaction.getXrefs().iterator(); iterator.hasNext() && imexId == null; ) {
  Xref xref = (Xref) iterator.next();

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psimitab-converters

Collection<InteractorXref> interactionRefs = interaction.getXrefs();