uk.ac.ebi.intact.model.Interaction.setShortLabel()方法的使用及代码示例

x33g5p2x  于2022-01-21 转载在 其他  
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本文整理了Java中uk.ac.ebi.intact.model.Interaction.setShortLabel()方法的一些代码示例，展示了Interaction.setShortLabel()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Interaction.setShortLabel()方法的具体详情如下：
包路径：uk.ac.ebi.intact.model.Interaction
类名称：Interaction
方法名：setShortLabel

Interaction.setShortLabel介绍

暂无

代码示例

代码示例来源：origin: uk.ac.ebi.intact.core/intact-persister

public void onPrePersist(Interaction objToPersist)
{
  String shortLabel = objToPersist.getShortLabel();
  String newShortLabel = InteractionUtils.syncShortLabelWithDb(shortLabel);
  if (!shortLabel.equals(newShortLabel)) {
    if (log.isDebugEnabled()) log.debug("Interaction with label '"+shortLabel+"' renamed '"+newShortLabel+"'" );
    objToPersist.setShortLabel(newShortLabel);
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public Interaction createInteraction(Component ... components) {
  CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION);
  Experiment experiment = createExperimentEmpty();
  CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.INTERACTION_MI_REF, CvInteractorType.INTERACTION );
  Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(experiment)),
                         cvInteractionType, intType, "temp", getInstitution());
  for (Component component : components) {
    interaction.addComponent(component);
  }
  try {
    String shortLabel = InteractionUtils.calculateShortLabel(interaction);
    interaction.setShortLabel(shortLabel);
  } catch (Exception e) {
    interaction.setShortLabel("unk-unk");
  }
  return interaction;
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

public Interaction createInteraction(Component ... components) {
  CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION);
  Experiment experiment = createExperimentEmpty();
  Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(experiment)), cvInteractionType, null, "temp", getInstitution());
  for (Component component : components) {
    interaction.addComponent(component);
  }
  String shortLabel = InteractionUtils.calculateShortLabel(interaction);
  interaction.setShortLabel(shortLabel);
  return interaction;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public Interaction createInteraction(Component ... components) {
  CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION);
  Experiment experiment = createExperimentEmpty();
  CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.INTERACTION_MI_REF, CvInteractorType.INTERACTION );
  Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(experiment)),
                         cvInteractionType, intType, "temp", getInstitution());
  for (Component component : components) {
    interaction.addComponent(component);
  }
  try {
    String shortLabel = InteractionUtils.calculateShortLabel(interaction);
    interaction.setShortLabel(shortLabel);
  } catch (Exception e) {
    interaction.setShortLabel("unk-unk");
  }
  return interaction;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public Interaction createInteraction(String ... interactorShortLabels) {
  Interaction interaction = createInteractionDirect();
  Protein prot = null;
  for (String interactorShortLabel : interactorShortLabels) {
    prot = createDeterministicProtein(interactorShortLabel, interactorShortLabel);
    createComponentNeutral(interaction, prot);
  }
  if (interactorShortLabels.length == 1) {
    createComponentNeutral(interaction, prot);
  }
  String shortLabel = InteractionUtils.calculateShortLabel(interaction);
  interaction.setShortLabel(shortLabel);
  return interaction;
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

public Interaction createInteractionRandomBinary() {
  CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION);
  Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(createExperimentEmpty())), cvInteractionType, null, nextString("label"), getInstitution());
  interaction.addComponent(createComponentBait(interaction, createProteinRandom()));
  interaction.addComponent(createComponentPrey(interaction, createProteinRandom()));
  String shortLabel = InteractionUtils.calculateShortLabel(interaction);
  interaction.setShortLabel(shortLabel);
  return interaction;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public Interaction createInteraction(String ... interactorShortLabels) {
  Interaction interaction = createInteractionDirect();
  Protein prot = null;
  for (String interactorShortLabel : interactorShortLabels) {
    prot = createDeterministicProtein(interactorShortLabel, interactorShortLabel);
    createComponentNeutral(interaction, prot);
  }
  if (interactorShortLabels.length == 1) {
    createComponentNeutral(interaction, prot);
  }
  String shortLabel = InteractionUtils.calculateShortLabel(interaction);
  interaction.setShortLabel(shortLabel);
  return interaction;
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

public Interaction createInteraction(String ... interactorShortLabels) {
  CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION);
  Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(createExperimentEmpty())), cvInteractionType, null, nextString("label"), getInstitution());
  for (String interactorShortLabel : interactorShortLabels) {
    interaction.addComponent(createComponentNeutral(interaction, createProtein("uniprotId", interactorShortLabel)));
  }
  if (interactorShortLabels.length == 1) {
    interaction.addComponent(createComponentNeutral(interaction, createProtein("uniprotId", interactorShortLabels[0])));
  }
  String shortLabel = InteractionUtils.calculateShortLabel(interaction);
  interaction.setShortLabel(shortLabel);
  return interaction;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public Interaction createInteractionRandomBinary(String imexId) {
  CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION);
  CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.INTERACTION_MI_REF, CvInteractorType.INTERACTION );
  Experiment experimentEmpty = createExperimentEmpty();
  Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(experimentEmpty)),
                         cvInteractionType, intType, nextString("label"), getInstitution());
  experimentEmpty.getInteractions().add(interaction);
  createComponentBait(interaction, createProteinRandom());
  createComponentPrey(interaction, createProteinRandom());
  String shortLabel = InteractionUtils.calculateShortLabel(interaction);
  interaction.setShortLabel(shortLabel);
  if (imexId != null) {
    CvObjectBuilder cvBuilder = new CvObjectBuilder();
    CvXrefQualifier idQual = cvBuilder.createIdentityCvXrefQualifier(getInstitution());
    CvDatabase imexDb = createCvObject(CvDatabase.class, CvDatabase.IMEX_MI_REF, CvDatabase.IMEX);
    interaction.addXref(new InteractorXref(getInstitution(), imexDb, imexId, idQual));
  }
  return interaction;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public Interaction createInteractionRandomBinary(String imexId) {
  CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION);
  CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.INTERACTION_MI_REF, CvInteractorType.INTERACTION );
  Experiment experimentEmpty = createExperimentEmpty();
  Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(experimentEmpty)),
                         cvInteractionType, intType, nextString("label"), getInstitution());
  experimentEmpty.getInteractions().add(interaction);
  createComponentBait(interaction, createProteinRandom());
  createComponentPrey(interaction, createProteinRandom());
  String shortLabel = InteractionUtils.calculateShortLabel(interaction);
  interaction.setShortLabel(shortLabel);
  if (imexId != null) {
    CvObjectBuilder cvBuilder = new CvObjectBuilder();
    CvXrefQualifier idQual = cvBuilder.createIdentityCvXrefQualifier(getInstitution());
    CvDatabase imexDb = createCvObject(CvDatabase.class, CvDatabase.IMEX_MI_REF, CvDatabase.IMEX);
    interaction.addXref(new InteractorXref(getInstitution(), imexDb, imexId, idQual));
  }
  return interaction;
}

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